Function Reference

This is a list of some of the more useful publically accessible functions. A full list of classes and their methods is available here.

DescriptionFactory

• public void createHBondCondition(double maxDH, double minDHA, double min, int donorNumber, int acceptorNumber)
• public void createPhiCondition(double midPoint, double range, int residueNumber)
• public void createPsiCondition(double midPoint, double range, int residueNumber)
• public TorsionMeasure createPhiMeasure(String name, int residueNumber)
• public TorsionMeasure createPsiMeasure(String name, int residueNumber)

Description

• public void addCondition(Condition condition)
• public Vector findStructureCenter(Structure structure)
• public void addSubDescription(Description subDescription)

ProteinDescription

• public ProteinDescription getPath(String residueName, String atomName)
• public ProteinDescription getPath(int residuePosition, String atomName)
• public ProteinDescription getPath(String chainName, String residueName, String atomName)